HL_7MPJ_014
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUCUUG(1MA)AAC(A2M)(OMC)G
- Length
- 14 nucleotides
- Bulged bases
- 7MPJ|1|A1|C|648
- QA status
- Modified nucleotides: 1MA, A2M, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_014 not in the Motif Atlas
- Geometric match to HL_4V9F_011
- Geometric discrepancy: 0.111
- The information below is about HL_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 21
Unit IDs
7MPJ|1|A1|C|638
7MPJ|1|A1|G|639
7MPJ|1|A1|U|640
7MPJ|1|A1|C|641
7MPJ|1|A1|U|642
7MPJ|1|A1|U|643
7MPJ|1|A1|G|644
7MPJ|1|A1|1MA|645
7MPJ|1|A1|A|646
7MPJ|1|A1|A|647
7MPJ|1|A1|C|648
7MPJ|1|A1|A2M|649
7MPJ|1|A1|OMC|650
7MPJ|1|A1|G|651
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AC
- 60S ribosomal protein L4-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ae
- 60S ribosomal protein L32
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