3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUGUAACAAC
Length
10 nucleotides
Bulged bases
7MPJ|1|A1|U|1267, 7MPJ|1|A1|U|1269, 7MPJ|1|A1|A|1271, 7MPJ|1|A1|C|1272, 7MPJ|1|A1|A|1273, 7MPJ|1|A1|A|1274
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7MPJ|1|A1|G|1266
7MPJ|1|A1|U|1267
7MPJ|1|A1|G|1268
7MPJ|1|A1|U|1269
7MPJ|1|A1|A|1270
7MPJ|1|A1|A|1271
7MPJ|1|A1|C|1272
7MPJ|1|A1|A|1273
7MPJ|1|A1|A|1274
7MPJ|1|A1|C|1275

Current chains

Chain A1
25S rRNA

Nearby chains

No other chains within 10Å

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1383 s