HL_7MPJ_035
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 7MPJ|1|A1|U|1606, 7MPJ|1|A1|U|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_035 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.0955
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7MPJ|1|A1|G|1599
7MPJ|1|A1|U|1600
7MPJ|1|A1|U|1601
7MPJ|1|A1|A|1602
7MPJ|1|A1|A|1603
7MPJ|1|A1|G|1604
7MPJ|1|A1|A|1605
7MPJ|1|A1|U|1606
7MPJ|1|A1|U|1607
7MPJ|1|A1|C|1608
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain AX
- 60S ribosomal protein L25
- Chain Ag
- 60S ribosomal protein L34-A
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