HL_7MPJ_053
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAUUCAUUUUC
- Length
- 12 nucleotides
- Bulged bases
- 7MPJ|1|A1|A|2535, 7MPJ|1|A1|U|2537, 7MPJ|1|A1|U|2538, 7MPJ|1|A1|C|2539, 7MPJ|1|A1|A|2540, 7MPJ|1|A1|U|2541, 7MPJ|1|A1|U|2543
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_053 not in the Motif Atlas
- Geometric match to HL_4LFB_005
- Geometric discrepancy: 0.3304
- The information below is about HL_4LFB_005
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_90436.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 37
Unit IDs
7MPJ|1|A1|G|2534
7MPJ|1|A1|A|2535
7MPJ|1|A1|A|2536
7MPJ|1|A1|U|2537
7MPJ|1|A1|U|2538
7MPJ|1|A1|C|2539
7MPJ|1|A1|A|2540
7MPJ|1|A1|U|2541
7MPJ|1|A1|U|2542
7MPJ|1|A1|U|2543
7MPJ|1|A1|U|2544
7MPJ|1|A1|C|2545
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AG
- 60S ribosomal protein L8-A
- Chain Ag
- 60S ribosomal protein L34-A
- Chain BB
- 40S ribosomal protein S1-A
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