HL_7MPJ_054

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

7MPJ|1|A1|A|2569, 7MPJ|1|A1|U|2571, 7MPJ|1|A1|C|2572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_054 not in the Motif Atlas

Geometric match to HL_6CZR_089

Geometric discrepancy: 0.3983

The information below is about HL_6CZR_089

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.1

Basepair signature

cWW-F

Number of instances in this motif group

51

Unit IDs

7MPJ|1|A1|C|2568
7MPJ|1|A1|A|2569
7MPJ|1|A1|U|2570
7MPJ|1|A1|U|2571
7MPJ|1|A1|C|2572
7MPJ|1|A1|G|2573

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AZ

60S ribosomal protein L27-A