HL_7MPJ_059
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- U(OMU)UCAG(OMU)GUGA
- Length
- 11 nucleotides
- Bulged bases
- 7MPJ|1|A1|A|2727
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_059 not in the Motif Atlas
- Geometric match to HL_6UGG_005
- Geometric discrepancy: 0.3594
- The information below is about HL_6UGG_005
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_83632.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
7MPJ|1|A1|U|2723
7MPJ|1|A1|OMU|2724
7MPJ|1|A1|U|2725
7MPJ|1|A1|C|2726
7MPJ|1|A1|A|2727
7MPJ|1|A1|G|2728
7MPJ|1|A1|OMU|2729
7MPJ|1|A1|G|2730
7MPJ|1|A1|U|2731
7MPJ|1|A1|G|2732
7MPJ|1|A1|A|2733
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ao
- 60S ribosomal protein L42-A
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