HL_7MPJ_068

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7MPJ|1|A1|G|3116, 7MPJ|1|A1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0535

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7MPJ|1|A1|C|3110
7MPJ|1|A1|U|3111
7MPJ|1|A1|G|3112
7MPJ|1|A1|A|3113
7MPJ|1|A1|A|3114
7MPJ|1|A1|C|3115
7MPJ|1|A1|G|3116
7MPJ|1|A1|C|3117
7MPJ|1|A1|C|3118
7MPJ|1|A1|U|3119
7MPJ|1|A1|C|3120
7MPJ|1|A1|U|3121
7MPJ|1|A1|A|3122
7MPJ|1|A1|A|3123
7MPJ|1|A1|G|3124

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L16-A

Chain Am

60S ribosomal protein L40-A