HL_7MPJ_070

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

7MPJ|1|A1|A|3243, 7MPJ|1|A1|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_070 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.0789

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7MPJ|1|A1|C|3240
7MPJ|1|A1|G|3241
7MPJ|1|A1|G|3242
7MPJ|1|A1|A|3243
7MPJ|1|A1|A|3244
7MPJ|1|A1|A|3245
7MPJ|1|A1|G|3246
7MPJ|1|A1|G|3247

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A