HL_7MPJ_077

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7MPJ|1|A4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_077 not in the Motif Atlas

Geometric match to HL_5TBW_076

Geometric discrepancy: 0.0904

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7MPJ|1|A4|G|124
7MPJ|1|A4|U|125
7MPJ|1|A4|A|126
7MPJ|1|A4|U|127
7MPJ|1|A4|U|128
7MPJ|1|A4|C|129

Current chains

Chain A4

5.8S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA