HL_7MPJ_079
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAUUUAUACAG
- Length
- 12 nucleotides
- Bulged bases
- 7MPJ|1|B5|A|72, 7MPJ|1|B5|U|73, 7MPJ|1|B5|U|74, 7MPJ|1|B5|U|75, 7MPJ|1|B5|U|77
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_079 not in the Motif Atlas
- Geometric match to HL_4V9F_011
- Geometric discrepancy: 0.0869
- The information below is about HL_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
7MPJ|1|B5|C|70
7MPJ|1|B5|A|71
7MPJ|1|B5|A|72
7MPJ|1|B5|U|73
7MPJ|1|B5|U|74
7MPJ|1|B5|U|75
7MPJ|1|B5|A|76
7MPJ|1|B5|U|77
7MPJ|1|B5|A|78
7MPJ|1|B5|C|79
7MPJ|1|B5|A|80
7MPJ|1|B5|G|81
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BG
- 40S ribosomal protein S6-A
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