HL_7MPJ_089

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

7MPJ|1|B5|U|454, 7MPJ|1|B5|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MPJ_089 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1559

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7MPJ|1|B5|U|450
7MPJ|1|B5|A|451
7MPJ|1|B5|A|452
7MPJ|1|B5|U|453
7MPJ|1|B5|U|454
7MPJ|1|B5|C|455
7MPJ|1|B5|A|456

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BY

40S ribosomal protein S24-A