3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UG(PSU)UCAAAG
Length
9 nucleotides
Bulged bases
7MPJ|1|B5|G|765
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7MPJ_094 not in the Motif Atlas
Geometric match to HL_4V88_203
Geometric discrepancy: 0.2937
The information below is about HL_4V88_203
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47383.2
Basepair signature
cWW-F-F-cWW-F-F
Number of instances in this motif group
11

Unit IDs

7MPJ|1|B5|U|764
7MPJ|1|B5|G|765
7MPJ|1|B5|PSU|766
7MPJ|1|B5|U|767
7MPJ|1|B5|C|768
7MPJ|1|B5|A|769
7MPJ|1|B5|A|770
7MPJ|1|B5|A|771
7MPJ|1|B5|G|772

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BE
40S ribosomal protein S4-A
Chain BJ
40S ribosomal protein S9-A
Chain BY
40S ribosomal protein S24-A

Coloring options:


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