HL_7MPJ_096

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

7MPJ|1|B5|U|832, 7MPJ|1|B5|U|833, 7MPJ|1|B5|G|834, 7MPJ|1|B5|C|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPJ|1|B5|C|827
7MPJ|1|B5|U|828
7MPJ|1|B5|A|829
7MPJ|1|B5|U|830
7MPJ|1|B5|U|831
7MPJ|1|B5|U|832
7MPJ|1|B5|U|833
7MPJ|1|B5|G|834
7MPJ|1|B5|U|835
7MPJ|1|B5|U|836
7MPJ|1|B5|G|837
7MPJ|1|B5|G|838
7MPJ|1|B5|U|839
7MPJ|1|B5|U|840
7MPJ|1|B5|U|841
7MPJ|1|B5|C|842
7MPJ|1|B5|U|843
7MPJ|1|B5|A|844
7MPJ|1|B5|G|845

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BL

40S ribosomal protein S11-A