HL_7MPJ_099
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUGA(PSU)CAGAUAC(OMC)GU
- Length
- 15 nucleotides
- Bulged bases
- 7MPJ|1|B5|C|1000, 7MPJ|1|B5|U|1004
- QA status
- Modified nucleotides: PSU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7MPJ_099 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.1863
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7MPJ|1|B5|A|995
7MPJ|1|B5|U|996
7MPJ|1|B5|G|997
7MPJ|1|B5|A|998
7MPJ|1|B5|PSU|999
7MPJ|1|B5|C|1000
7MPJ|1|B5|A|1001
7MPJ|1|B5|G|1002
7MPJ|1|B5|A|1003
7MPJ|1|B5|U|1004
7MPJ|1|B5|A|1005
7MPJ|1|B5|C|1006
7MPJ|1|B5|OMC|1007
7MPJ|1|B5|G|1008
7MPJ|1|B5|U|1009
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- 60S ribosomal protein L2-A
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- 40S ribosomal protein S26-A
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