HL_7MPJ_112

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGAUCUCGGCAACUCCAUCU*C

Length

22 nucleotides

Bulged bases

7MPJ|1|B5|G|1692, 7MPJ|1|B5|A|1693, 7MPJ|1|B5|U|1708, 7MPJ|1|B5|C|1709, 7MPJ|1|B5|U|1710, 7MPJ|1|B5|G|1698, 7MPJ|1|B5|G|1699, 7MPJ|1|B5|C|1700, 7MPJ|1|B5|A|1701, 7MPJ|1|B5|A|1702, 7MPJ|1|B5|C|1703, 7MPJ|1|B5|U|1704, 7MPJ|1|B5|C|1705, 7MPJ|1|B5|C|1706, 7MPJ|1|B5|A|1707, 7MPJ|1|B5|U|1708, 7MPJ|1|B5|C|1709

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPJ|1|B5|G|1690
7MPJ|1|B5|A|1691
7MPJ|1|B5|G|1692
7MPJ|1|B5|A|1693
7MPJ|1|B5|U|1708
7MPJ|1|B5|C|1709
7MPJ|1|B5|U|1710
7MPJ|1|B5|C|1711
7MPJ|1|B5|G|1698
7MPJ|1|B5|G|1699
7MPJ|1|B5|C|1700
7MPJ|1|B5|A|1701
7MPJ|1|B5|A|1702
7MPJ|1|B5|C|1703
7MPJ|1|B5|U|1704
7MPJ|1|B5|C|1705
7MPJ|1|B5|C|1706
7MPJ|1|B5|A|1707
7MPJ|1|B5|U|1708
7MPJ|1|B5|C|1709
7MPJ|1|B5|U|1710
*
7MPJ|1|B5|C|1711

Current chains

Chain B5

18S rRNA

Nearby chains