HL_7MQA_011

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

7MQA|1|L1|U|541, 7MQA|1|L1|U|542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQA_011 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2059

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7MQA|1|L1|C|539
7MQA|1|L1|U|540
7MQA|1|L1|U|541
7MQA|1|L1|U|542
7MQA|1|L1|C|543
7MQA|1|L1|G|544

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NB

Something about silencing protein 10

Chain SI

Ribosome biogenesis protein BMS1 homolog

Chain SL

rRNA-processing protein FCF1 homolog

Chain SQ

Deoxynucleotidyltransferase terminal-interacting protein 2