HL_7MQA_027

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQA_027 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.4483

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

7MQA|1|L1|C|1460
7MQA|1|L1|G|1461
7MQA|1|L1|U|1462
7MQA|1|L1|U|1463
7MQA|1|L1|C|1464
7MQA|1|L1|A|1465
7MQA|1|L1|G|1466

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NU

40S ribosomal protein S17