HL_7MQA_029

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

7MQA|1|L1|U|1659, 7MQA|1|L1|C|1660, 7MQA|1|L1|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MQA|1|L1|G|1658
7MQA|1|L1|U|1659
7MQA|1|L1|C|1660
7MQA|1|L1|A|1661
7MQA|1|L1|U|1662
7MQA|1|L1|A|1663
7MQA|1|L1|A|1664
7MQA|1|L1|G|1665
7MQA|1|L1|C|1666

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NA

U3 small nucleolar ribonucleoprotein protein MPP10

Chain SI

Ribosome biogenesis protein BMS1 homolog

Chain SM

U3 small nucleolar ribonucleoprotein protein IMP4

Chain ST

Nucleolar protein 14

Chain SY

Probable U3 small nucleolar RNA-associated protein 11