HL_7MQA_031

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

7MQA|1|L1|U|1848, 7MQA|1|L1|G|1849, 7MQA|1|L1|A|1851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7MQA_031 not in the Motif Atlas

Geometric match to HL_6AAX_001

Geometric discrepancy: 0.2978

The information below is about HL_6AAX_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7MQA|1|L1|G|1847
7MQA|1|L1|U|1848
7MQA|1|L1|G|1849
7MQA|1|L1|A|1850
7MQA|1|L1|A|1851
7MQA|1|L1|C|1852

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NA

U3 small nucleolar ribonucleoprotein protein MPP10

Chain NL

Probable dimethyladenosine transferase