HL_7N1P_104
3D structure
- PDB id
- 7N1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CAG(H2U)CGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 7N1P|1|Dt|C|17, 7N1P|1|Dt|G|18, 7N1P|1|Dt|G|19, 7N1P|1|Dt|U|20
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7N1P_104 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.0811
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
7N1P|1|Dt|C|13
7N1P|1|Dt|A|14
7N1P|1|Dt|G|15
7N1P|1|Dt|H2U|16
7N1P|1|Dt|C|17
7N1P|1|Dt|G|18
7N1P|1|Dt|G|19
7N1P|1|Dt|U|20
7N1P|1|Dt|A|21
7N1P|1|Dt|G|22
Current chains
- Chain Dt
- tRNA
Nearby chains
- Chain 23
- Large subunit ribosomal RNA; LSU rRNA
- Chain LE
- 50S ribosomal protein L5
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