HL_7N1P_109

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

G(5MU)(PSU)CGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N1P_109 not in the Motif Atlas

Homologous match to HL_5L4O_003

Geometric discrepancy: 0.0902

The information below is about HL_5L4O_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7N1P|1|Pt|G|53
7N1P|1|Pt|5MU|54
7N1P|1|Pt|PSU|55
7N1P|1|Pt|C|56
7N1P|1|Pt|G|57
7N1P|1|Pt|A|58
7N1P|1|Pt|A|59
7N1P|1|Pt|U|60
7N1P|1|Pt|C|61

Current chains

Chain Pt

tRNA

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain LP

50S ribosomal protein L16