HL_7N2V_058

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

7N2V|1|23|U|958, 7N2V|1|23|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2V_058 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0758

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N2V|1|23|G|954
7N2V|1|23|PSU|955
7N2V|1|23|G|956
7N2V|1|23|C|957
7N2V|1|23|U|958
7N2V|1|23|A|959
7N2V|1|23|A|960
7N2V|1|23|C|961
7N2V|1|23|G|962
7N2V|1|23|U|963

Current chains

Chain 23

23S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain LP

50S ribosomal protein L16