HL_7N2V_067

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

7N2V|1|23|U|1396, 7N2V|1|23|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2V_067 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0769

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7N2V|1|23|G|1389
7N2V|1|23|U|1390
7N2V|1|23|U|1391
7N2V|1|23|A|1392
7N2V|1|23|A|1393
7N2V|1|23|U|1394
7N2V|1|23|A|1395
7N2V|1|23|U|1396
7N2V|1|23|U|1397
7N2V|1|23|C|1398

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LW

50S ribosomal protein L23