HL_7N2V_107

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UCAGUUGGUAGA

Length

12 nucleotides

Bulged bases

7N2V|1|Pt|U|16, 7N2V|1|Pt|U|17, 7N2V|1|Pt|G|18, 7N2V|1|Pt|G|19, 7N2V|1|Pt|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N2V_107 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3942

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7N2V|1|Pt|U|12
7N2V|1|Pt|C|13
7N2V|1|Pt|A|14
7N2V|1|Pt|G|15
7N2V|1|Pt|U|16
7N2V|1|Pt|U|17
7N2V|1|Pt|G|18
7N2V|1|Pt|G|19
7N2V|1|Pt|U|20
7N2V|1|Pt|A|21
7N2V|1|Pt|G|22
7N2V|1|Pt|A|23

Current chains

Chain Pt

tRNA

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain LE

50S ribosomal protein L5