3D structure

PDB id
7N30 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
CAGUUGGGAG
Length
10 nucleotides
Bulged bases
7N30|1|Dt|U|16, 7N30|1|Dt|U|17, 7N30|1|Dt|G|18, 7N30|1|Dt|G|19, 7N30|1|Dt|G|20
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7N30_103 not in the Motif Atlas
Homologous match to HL_1QF6_001
Geometric discrepancy: 0.1472
The information below is about HL_1QF6_001
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20490.1
Basepair signature
cWW-cWS-F
Number of instances in this motif group
13

Unit IDs

7N30|1|Dt|C|13
7N30|1|Dt|A|14
7N30|1|Dt|G|15
7N30|1|Dt|U|16
7N30|1|Dt|U|17
7N30|1|Dt|G|18
7N30|1|Dt|G|19
7N30|1|Dt|G|20
7N30|1|Dt|A|21
7N30|1|Dt|G|22

Current chains

Chain Dt
tRNA

Nearby chains

Chain 23
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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