HL_7N30_106

3D structure

PDB id

7N30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAG(H2U)(H2U)GG(H2U)AG

Length

10 nucleotides

Bulged bases

7N30|1|Pt|G|18, 7N30|1|Pt|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N30_106 not in the Motif Atlas

Homologous match to HL_3AMU_001

Geometric discrepancy: 0.3327

The information below is about HL_3AMU_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_76842.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

7N30|1|Pt|C|13
7N30|1|Pt|A|14
7N30|1|Pt|G|15
7N30|1|Pt|H2U|16
7N30|1|Pt|H2U|17
7N30|1|Pt|G|18
7N30|1|Pt|G|19
7N30|1|Pt|H2U|20
7N30|1|Pt|A|21
7N30|1|Pt|G|22

Current chains

Chain Pt

tRNA

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA