HL_7N3O_002

3D structure

PDB id

7N3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Cas12k-sgRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N3O_002 not in the Motif Atlas

Geometric match to HL_4V9F_009

Geometric discrepancy: 0.1853

The information below is about HL_4V9F_009

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7N3O|1|B|A|72
7N3O|1|B|U|73
7N3O|1|B|A|74
7N3O|1|B|A|75
7N3O|1|B|A|76
7N3O|1|B|U|77

Current chains

Chain B

Single guide RNA

Nearby chains

Chain A

Cas12k