HL_7N3O_005

3D structure

PDB id

7N3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Cas12k-sgRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUGUAC

Length

7 nucleotides

Bulged bases

7N3O|1|B|U|170

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N3O_005 not in the Motif Atlas

Geometric match to HL_5LM7_001

Geometric discrepancy: 0.2527

The information below is about HL_5LM7_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7N3O|1|B|G|166
7N3O|1|B|A|167
7N3O|1|B|U|168
7N3O|1|B|G|169
7N3O|1|B|U|170
7N3O|1|B|A|171
7N3O|1|B|C|172

Current chains

Chain B

Single guide RNA

Nearby chains