HL_7N8B_010

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0721

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7N8B|1|A1|A|357
7N8B|1|A1|G|358
7N8B|1|A1|U|359
7N8B|1|A1|G|360
7N8B|1|A1|A|361
7N8B|1|A1|U|362

Current chains

Chain A1

25S

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain Aj

60S ribosomal protein L37-A

Chain Al

60S ribosomal protein L39