HL_7N8B_023

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUUCCGGGGUCACCUUGAC

Length

19 nucleotides

Bulged bases

7N8B|1|A1|U|1014, 7N8B|1|A1|C|1016, 7N8B|1|A1|G|1018, 7N8B|1|A1|C|1023, 7N8B|1|A1|C|1032, 7N8B|1|A1|U|1034

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N8B|1|A1|G|1013
7N8B|1|A1|U|1014
7N8B|1|A1|U|1015
7N8B|1|A1|C|1016
7N8B|1|A1|C|1017
7N8B|1|A1|G|1018
7N8B|1|A1|G|1019
7N8B|1|A1|G|1020
7N8B|1|A1|G|1021
7N8B|1|A1|U|1022
7N8B|1|A1|C|1023
7N8B|1|A1|A|1030
7N8B|1|A1|C|1031
7N8B|1|A1|C|1032
7N8B|1|A1|U|1033
7N8B|1|A1|U|1034
7N8B|1|A1|G|1035
7N8B|1|A1|A|1036
7N8B|1|A1|C|1037

Current chains

Chain A1

25S

Nearby chains

Chain Bh

Suppressor protein STM1