HL_7N8B_025

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

7N8B|1|A1|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_025 not in the Motif Atlas

Geometric match to HL_4V9F_045

Geometric discrepancy: 0.1136

The information below is about HL_4V9F_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7N8B|1|A1|G|1126
7N8B|1|A1|G|1127
7N8B|1|A1|U|1128
7N8B|1|A1|A|1129
7N8B|1|A1|A|1130
7N8B|1|A1|G|1131
7N8B|1|A1|C|1132

Current chains

Chain A1

25S

Nearby chains

Chain AI

60S ribosomal protein L10