HL_7N8B_029

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

7N8B|1|A1|G|1349, 7N8B|1|A1|A|1350, 7N8B|1|A1|G|1354, 7N8B|1|A1|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N8B|1|A1|U|1347
7N8B|1|A1|U|1348
7N8B|1|A1|G|1349
7N8B|1|A1|A|1350
7N8B|1|A1|U|1351
7N8B|1|A1|A|1352
7N8B|1|A1|U|1353
7N8B|1|A1|G|1354
7N8B|1|A1|A|1355
7N8B|1|A1|U|1356
7N8B|1|A1|G|1357

Current chains

Chain A1

25S

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain AE

60S ribosomal protein L6-A

Chain AQ

60S ribosomal protein L18-A