HL_7N8B_035

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

7N8B|1|A1|U|1606, 7N8B|1|A1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_035 not in the Motif Atlas

Homologous match to HL_8C3A_035

Geometric discrepancy: 0.0902

The information below is about HL_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7N8B|1|A1|G|1599
7N8B|1|A1|U|1600
7N8B|1|A1|U|1601
7N8B|1|A1|A|1602
7N8B|1|A1|A|1603
7N8B|1|A1|G|1604
7N8B|1|A1|A|1605
7N8B|1|A1|U|1606
7N8B|1|A1|U|1607
7N8B|1|A1|C|1608

Current chains

Chain A1

25S

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AX

60S ribosomal protein L25

Chain Ag

60S ribosomal protein L34-A