HL_7N8B_052

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAGACAUAGUUUCU

Length

15 nucleotides

Bulged bases

7N8B|1|A1|A|2441, 7N8B|1|A1|A|2443, 7N8B|1|A1|U|2501, 7N8B|1|A1|U|2504, 7N8B|1|A1|C|2507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_052 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2391

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7N8B|1|A1|A|2439
7N8B|1|A1|G|2440
7N8B|1|A1|A|2441
7N8B|1|A1|G|2442
7N8B|1|A1|A|2443
7N8B|1|A1|C|2444
7N8B|1|A1|A|2445
7N8B|1|A1|U|2501
7N8B|1|A1|A|2502
7N8B|1|A1|G|2503
7N8B|1|A1|U|2504
7N8B|1|A1|U|2505
7N8B|1|A1|U|2506
7N8B|1|A1|C|2507
7N8B|1|A1|U|2508

Current chains

Chain A1

25S

Nearby chains

Chain Ai

60S ribosomal protein L36-A

Chain BB

40S ribosomal protein S1-A