HL_7N8B_053

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAAUUCAUUUUC

Length

12 nucleotides

Bulged bases

7N8B|1|A1|A|2535, 7N8B|1|A1|U|2537, 7N8B|1|A1|C|2539, 7N8B|1|A1|U|2541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N8B|1|A1|G|2534
7N8B|1|A1|A|2535
7N8B|1|A1|A|2536
7N8B|1|A1|U|2537
7N8B|1|A1|U|2538
7N8B|1|A1|C|2539
7N8B|1|A1|A|2540
7N8B|1|A1|U|2541
7N8B|1|A1|U|2542
7N8B|1|A1|U|2543
7N8B|1|A1|U|2544
7N8B|1|A1|C|2545

Current chains

Chain A1

25S

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain BB

40S ribosomal protein S1-A