HL_7N8B_055

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

7N8B|1|A1|G|2618

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0944

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7N8B|1|A1|C|2616
7N8B|1|A1|U|2617
7N8B|1|A1|G|2618
7N8B|1|A1|OMG|2619
7N8B|1|A1|G|2620
7N8B|1|A1|G|2621
7N8B|1|A1|C|2622
7N8B|1|A1|G|2623
7N8B|1|A1|G|2624

Current chains

Chain A1

25S

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Ab

60S ribosomal protein L29