HL_7N8B_060

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_060 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0852

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7N8B|1|A1|U|2744
7N8B|1|A1|G|2745
7N8B|1|A1|A|2746
7N8B|1|A1|A|2747
7N8B|1|A1|A|2748
7N8B|1|A1|G|2749

Current chains

Chain A1

25S

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AT

60S ribosomal protein L21-A

Chain Ao

60S ribosomal protein L42-A