HL_7N8B_064

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

U(OMU)(OMG)UUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_064 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.092

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7N8B|1|A1|U|2920
7N8B|1|A1|OMU|2921
7N8B|1|A1|OMG|2922
7N8B|1|A1|U|2923
7N8B|1|A1|U|2924
7N8B|1|A1|C|2925
7N8B|1|A1|A|2926

Current chains

Chain A1

25S

Nearby chains

Chain AB

60S ribosomal protein L3