HL_7N8B_068

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7N8B|1|A1|G|3116, 7N8B|1|A1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0536

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7N8B|1|A1|C|3110
7N8B|1|A1|U|3111
7N8B|1|A1|G|3112
7N8B|1|A1|A|3113
7N8B|1|A1|A|3114
7N8B|1|A1|C|3115
7N8B|1|A1|G|3116
7N8B|1|A1|C|3117
7N8B|1|A1|C|3118
7N8B|1|A1|U|3119
7N8B|1|A1|C|3120
7N8B|1|A1|U|3121
7N8B|1|A1|A|3122
7N8B|1|A1|A|3123
7N8B|1|A1|G|3124

Current chains

Chain A1

25S

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L16-A

Chain Am

60S ribosomal protein L40-A