HL_7N8B_070

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

7N8B|1|A1|A|3243, 7N8B|1|A1|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_070 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.088

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7N8B|1|A1|C|3240
7N8B|1|A1|G|3241
7N8B|1|A1|G|3242
7N8B|1|A1|A|3243
7N8B|1|A1|A|3244
7N8B|1|A1|A|3245
7N8B|1|A1|G|3246
7N8B|1|A1|G|3247

Current chains

Chain A1

25S

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A