HL_7N8B_077

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

7N8B|1|A4|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_077 not in the Motif Atlas

Geometric match to HL_5TBW_076

Geometric discrepancy: 0.1227

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7N8B|1|A4|G|124
7N8B|1|A4|U|125
7N8B|1|A4|A|126
7N8B|1|A4|U|127
7N8B|1|A4|U|128
7N8B|1|A4|C|129

Current chains

Chain A4

5.8S

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA