HL_7N8B_082

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUCUUCGGAC

Length

10 nucleotides

Bulged bases

7N8B|1|B5|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_082 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3024

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7N8B|1|B5|G|228
7N8B|1|B5|U|229
7N8B|1|B5|C|230
7N8B|1|B5|U|231
7N8B|1|B5|U|232
7N8B|1|B5|C|233
7N8B|1|B5|G|234
7N8B|1|B5|G|235
7N8B|1|B5|A|236
7N8B|1|B5|C|237

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains