HL_7N8B_088

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAU(OMC)CAAGG(A2M)AG

Length

12 nucleotides

Bulged bases

7N8B|1|B5|A|416

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N8B|1|B5|C|411
7N8B|1|B5|A|412
7N8B|1|B5|U|413
7N8B|1|B5|OMC|414
7N8B|1|B5|C|415
7N8B|1|B5|A|416
7N8B|1|B5|A|417
7N8B|1|B5|G|418
7N8B|1|B5|G|419
7N8B|1|B5|A2M|420
7N8B|1|B5|A|421
7N8B|1|B5|G|422

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain AV

60S ribosomal protein L23-A

Chain BG

40S ribosomal protein S6-A