HL_7N8B_093

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAACC

Length

34 nucleotides

Bulged bases

7N8B|1|B5|A|707, 7N8B|1|B5|C|716, 7N8B|1|B5|U|718, 7N8B|1|B5|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7N8B|1|B5|G|703
7N8B|1|B5|C|704
7N8B|1|B5|U|705
7N8B|1|B5|A|706
7N8B|1|B5|A|707
7N8B|1|B5|C|708
7N8B|1|B5|C|709
7N8B|1|B5|U|710
7N8B|1|B5|U|711
7N8B|1|B5|G|712
7N8B|1|B5|A|713
7N8B|1|B5|G|714
7N8B|1|B5|U|715
7N8B|1|B5|C|716
7N8B|1|B5|C|717
7N8B|1|B5|U|718
7N8B|1|B5|U|719
7N8B|1|B5|G|720
7N8B|1|B5|U|721
7N8B|1|B5|G|722
7N8B|1|B5|G|723
7N8B|1|B5|C|724
7N8B|1|B5|U|725
7N8B|1|B5|C|726
7N8B|1|B5|U|727
7N8B|1|B5|U|728
7N8B|1|B5|G|729
7N8B|1|B5|G|730
7N8B|1|B5|C|731
7N8B|1|B5|G|732
7N8B|1|B5|A|733
7N8B|1|B5|A|734
7N8B|1|B5|C|735
7N8B|1|B5|C|736

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A