HL_7N8B_099

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGAUCAGAUAC(OMC)G

Length

13 nucleotides

Bulged bases

7N8B|1|B5|A|1005

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_099 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2515

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7N8B|1|B5|U|996
7N8B|1|B5|G|997
7N8B|1|B5|A|998
7N8B|1|B5|U|999
7N8B|1|B5|C|1000
7N8B|1|B5|A|1001
7N8B|1|B5|G|1002
7N8B|1|B5|A|1003
7N8B|1|B5|U|1004
7N8B|1|B5|A|1005
7N8B|1|B5|C|1006
7N8B|1|B5|OMC|1007
7N8B|1|B5|G|1008

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BO

40S ribosomal protein S14-A

Chain Ba

40S ribosomal protein S26-B