HL_7N8B_102
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- UCGCAA(OMG)G
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7N8B_102 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.3491
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
7N8B|1|B5|U|1120
7N8B|1|B5|C|1121
7N8B|1|B5|G|1122
7N8B|1|B5|C|1123
7N8B|1|B5|A|1124
7N8B|1|B5|A|1125
7N8B|1|B5|OMG|1126
7N8B|1|B5|G|1127
Current chains
- Chain B5
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain Ap
- 60S ribosomal protein L43-A
Coloring options: