HL_7N8B_107

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AUUU

Length

4 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_107 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2738

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7N8B|1|B5|A|1360
7N8B|1|B5|U|1361
7N8B|1|B5|U|1362
7N8B|1|B5|U|1363

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BQ

40S ribosomal protein S16-A

Chain BT

40S ribosomal protein S19-A