HL_7N8B_108

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_108 not in the Motif Atlas

Geometric match to HL_5TBW_048

Geometric discrepancy: 0.2723

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7N8B|1|B5|U|1396
7N8B|1|B5|U|1397
7N8B|1|B5|U|1398
7N8B|1|B5|C|1399
7N8B|1|B5|A|1400
7N8B|1|B5|A|1401
7N8B|1|B5|G|1402

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BR

40S ribosomal protein S17-A