HL_7N8B_109

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_109 not in the Motif Atlas

Geometric match to HL_3AM1_003

Geometric discrepancy: 0.1041

The information below is about HL_3AM1_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

7N8B|1|B5|C|1501
7N8B|1|B5|G|1502
7N8B|1|B5|A|1503
7N8B|1|B5|G|1504
7N8B|1|B5|A|1505
7N8B|1|B5|G|1506

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BP

40S ribosomal protein S15

Chain BS

40S ribosomal protein S18-A

Chain BT

40S ribosomal protein S19-A