HL_7N8B_112

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GAGAUCUCGGCAACUCCAUCU*C

Length

22 nucleotides

Bulged bases

7N8B|1|B5|A|1693, 7N8B|1|B5|U|1708, 7N8B|1|B5|C|1709, 7N8B|1|B5|G|1698, 7N8B|1|B5|G|1699, 7N8B|1|B5|C|1700, 7N8B|1|B5|A|1701, 7N8B|1|B5|A|1702, 7N8B|1|B5|C|1703, 7N8B|1|B5|U|1704, 7N8B|1|B5|C|1705, 7N8B|1|B5|C|1706, 7N8B|1|B5|A|1707, 7N8B|1|B5|U|1708, 7N8B|1|B5|C|1709

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7N8B_112 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.2935

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53014.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

7N8B|1|B5|G|1690
7N8B|1|B5|A|1691
7N8B|1|B5|G|1692
7N8B|1|B5|A|1693
7N8B|1|B5|U|1708
7N8B|1|B5|C|1709
7N8B|1|B5|U|1710
7N8B|1|B5|C|1711
7N8B|1|B5|G|1698
7N8B|1|B5|G|1699
7N8B|1|B5|C|1700
7N8B|1|B5|A|1701
7N8B|1|B5|A|1702
7N8B|1|B5|C|1703
7N8B|1|B5|U|1704
7N8B|1|B5|C|1705
7N8B|1|B5|C|1706
7N8B|1|B5|A|1707
7N8B|1|B5|U|1708
7N8B|1|B5|C|1709
7N8B|1|B5|U|1710
*
7N8B|1|B5|C|1711

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BG

40S ribosomal protein S6-A